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Old 03-26-2010, 04:32 AM   #27
Location: Montreal

Join Date: Oct 2009
Posts: 63

Originally Posted by MattB View Post
The best thing to do is probably select a small number of your discovered SNPs, and test them in a validation panel of other individuals. This will tell you if your assembly and SNP discovery is doing a good job.
This is a very good approach to take for data validation. It tests your discovery pipeline at the same time and if you build a good panel, it's cheaper in the end to run on many of your individuals.
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