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Old 05-26-2015, 08:14 AM   #14
SNPsaurus
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Location: Eugene, OR

Join Date: May 2013
Posts: 501
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Thanks for the info, nucacidhunter. I am curious about the QXT kmer plot, though. Looking at the base% plot, the bias is GC at the first 2 nucs then mildly T. How come there are no kmers with that at the start? I guess the kmers shown have some representation across the read. I like to compare kmers at the start to kmers selected from the middle of the read to see differences after normalizing the kmer content of the genome. Pretty interesting, though!
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