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Old 08-23-2015, 12:25 PM   #4
maubp
Peter (Biopython etc)
 
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,542
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Maybe read http://dx.doi.org/10.1371/journal.pcbi.1000160 (linked to from the tool help in the Galaxy wrapper XML file).

My RBH tool does not use the e-value at all, the "best" hit has the highest bit score (which in turn means it has the lowest e-value because BLAST calculates that from the bit score).
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