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Old 12-28-2015, 12:03 AM   #2
Senior Member
Location: Germany

Join Date: Oct 2008
Posts: 415

There are tools for this - snpEff and Annovar are popular.

Snpeff is quite simple too. You SNP will need to be in an _annotated_ mRNA seq of course.

Input is VCF format.
colindaven is offline   Reply With Quote