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Old 03-23-2016, 12:41 PM   #2
HESmith
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Location: Bethesda MD

Join Date: Oct 2009
Posts: 503
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Illumina's bcl2fastq2 would probably be the fastest demultiplexer that's mismatch-tolerant (--barcode-mismatches flag, accepts 0-2, default=1). N.B.-this assumes you have access to the full run directory.
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