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Old 03-23-2016, 02:26 PM   #4
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,978

Originally Posted by spark View Post
Thanks - I'll look into using that. I've only had access to the fastq files to date, but I should be able to access the bcl files too.
That would be the easiest way.

You could enumerate all tags present in your files and then go back and use the demultiplexer from BBMap to get every read in the original file.
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