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Old 09-10-2010, 05:18 AM   #3
sandhya
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Location: India

Join Date: Sep 2010
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Thank you, maubp for the reply. In the wiki it is mentioned that Illumina uses a /1 or /2 suffix. Are there cases when the suffix is not present or does this mean these are not Illumina-generated reads?

Infact when I used Novoalign to read the fastq file, it summarised the file as 'Interpreting input files as Sanger FASTQ'. So it could be that the files are Sanger-generated. Please let me know if this is right.
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