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Old 08-16-2011, 01:13 AM   #8
stoker
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Location: Poland

Join Date: Oct 2010
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Quote:
Originally Posted by maubp View Post
Yes, there should be a one-to-one mapping between the forward reads file and the reverse reads file. i.e. Same fragments in same order.
What about the case if my pair end fastq files have different number of reads (Illumina GAIIx)? Could you suggest any software to find common part?
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Tomasz Stokowy
www.sequencing.io.gliwice.pl
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