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Old 02-20-2014, 02:14 PM   #3
DrWorm
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Location: St. Louis, MO

Join Date: Apr 2013
Posts: 17
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Thanks so much for your reply!

Just to be 100% sure...
I run the DESeq function just as you demonstrated, then I grab the results:
res <- results(dds)
Any gene with an adjusted p-value less than 1e-5 (or whatever confidence cutoff we choose) will be differentially expressed at some stage, whereas the others show stable expression levels over the life cycle. Is this correct?
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