SEQanswers - View Single Post - Difference between Broad and Sharp peaks in chip Seq data

Dario1984 · 08-10-2014, 11:00 PM

Nobody has done an extensive evaluation of competing methods. Choose a recently published method, such as Enriched Domain Detector, which is described in a journal article. It doesn't make sense to do motif finding for broad regions. That's for sharp peaks, such as when the experiment is about transcription factors.

08-10-2014, 11:00 PM	#2
Dario1984 Senior Member Location: Sydney, Australia Join Date: Jun 2011 Posts: 166	Nobody has done an extensive evaluation of competing methods. Choose a recently published method, such as Enriched Domain Detector, which is described in a journal article. It doesn't make sense to do motif finding for broad regions. That's for sharp peaks, such as when the experiment is about transcription factors.