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Old 08-10-2014, 11:00 PM   #2
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Location: Sydney, Australia

Join Date: Jun 2011
Posts: 166

Nobody has done an extensive evaluation of competing methods. Choose a recently published method, such as Enriched Domain Detector, which is described in a journal article. It doesn't make sense to do motif finding for broad regions. That's for sharp peaks, such as when the experiment is about transcription factors.
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