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Old 02-08-2014, 12:28 PM   #4
logicthief
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Location: California

Join Date: Jan 2012
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Quote:
Originally Posted by GenoMax View Post
Have you looked at the quality score distribution of the reads? Was that normal?
Overall distribution of quality score looks okay to me
per_base_quality.png

The distribution of quality for the reads with >200 soft clipping does look a little weird, though.
per_base_quality2.png
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