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Old 11-03-2012, 03:33 PM   #1
Location: Germany

Join Date: Aug 2012
Posts: 25
Default Splitting multiple sample vcf file

A question appears when working with vcf file produced by UnifiedGenotyper on multiple samples. It is of course better to work with single sample vcf file so I was trying to split the multiple sampel vcf file. I used vcf-subset of vcftools but the problem is that the splitted single sample vcf file still has homozygous reference calls. Does anyone has a easy solution to this problem?
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