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Old 09-10-2013, 10:32 AM   #4
mastal
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Location: uk

Join Date: Mar 2009
Posts: 667
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according to the Bowtie2 manual,
the format of the bowtie-build statement should be

Code:
bowtie2-build [options]* <reference_in> <bt2_base>
You might want to use the option -f to specify that your reference is in fasta format.
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