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Old 01-15-2014, 10:50 AM   #4
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,075

Are you using the raw data for trimming? Why not use the TruSeq3 (PE) adapters that Trimmomatic includes (you will find those files in "Trimmomatic-0.30/adapters/") for the ILLUMINACLIP input.
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