View Single Post
Old 04-01-2010, 04:26 PM   #1
agroster
Member
 
Location: Bay Area

Join Date: Jan 2010
Posts: 13
Default consed newbie: how to export scaffold information

Hi, I recently ran a MIRA assembly of my 454 data and saved it to .ace file format. I can open it in consed with the -nophd function and consed will assemble the contigs using mate-pair data.

Question: how do I export the sequences of the scaffolds?

I'd like to get the scaffolds in fasta format to compare it to scaffolds made by Celera Assembler.

Thanks for your help!

ag.
agroster is offline   Reply With Quote