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Old 04-11-2015, 03:39 AM   #4
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,076
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1. What format are your blast results in (html, xml, text)? You may be able to parse that result file if all you want to know is how many sequences hit a "virus".

2. If you did the blast locally do you have a sequence file with all "virus" sequences available? You will be able to use that file as an input for bowtie2 and follow the path @Michael.Ante suggested.

3. Are you comfortable using command line (e.g. linux) applications?
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