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Old 05-17-2015, 02:25 AM   #4
rodrigo.duarte88
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Location: London

Join Date: Jan 2015
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And yeah, I am aware the first column of the gtf file needs to match the headers of my chr10.fa reference files (that I check with command "bowtie2-inspect --names chr10").. So i manually changed the headers of the fasta file, created new index files, tried to run and it also didn't work (which is expected since it lost all the genomic coordinates information haha).

I don't know how to do this, that's why I was asking for an example of files ready for a run.. hehe

Thanks a lot for your attention!
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