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Old 08-13-2015, 06:23 AM   #2
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Join Date: Feb 2008
Posts: 7,075

bam2fastq is not part of new samtools (v.1.2) Peter's post below. It is not in v.0.1.19.

Use bamtofastq from bedtools:

Note: How well this will work with a file from Ion you will have to tell us.

Last edited by GenoMax; 08-13-2015 at 07:45 AM.
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