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Old 08-13-2015, 07:53 AM   #1
ninja_help
Junior Member
 
Location: West Coast

Join Date: Aug 2015
Posts: 6
Default bedtools giving me an error, new program suggestions?

Hi all

Recently I started using bedtools as a way of analyzing a genome, it was working fantastically. But I ran into an error which is making me look into other methods of analyzing a genome (other than writing my own script, but alas it might come down to that )

The error I encounter is the following

Quote:
Start was greater than end.
This occurred because my coordinates for several positions in the genome were going from say position 60 to 40 as a result of an analysis I ran using RepeatMasker.

My question is there a program that would take and not give me an error. Or do I have to come to my own and write my own script ?

Cheers
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