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Old 08-13-2015, 07:59 AM   #2
vivek_
PhD Student
 
Location: Denmark

Join Date: Jul 2012
Posts: 164
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That error is very logical if you want the tool to work on bed files. You could flip the coordinates and add a 4th column indicating +/- in the BED file to preserve orientation for such cases before using BEDtools.
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