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Old 03-01-2011, 09:08 AM   #7
zack80.liu
Junior Member
 
Location: TX

Join Date: Feb 2011
Posts: 9
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single read mapping can reach 80%

# reads processed: 34439174
# reads with at least one reported alignment: 27167675 (78.89%)
# reads that failed to align: 7271499 (21.11%)

Well paired mapping is only 52%

Any idea? Thanks!
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