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Old 10-18-2011, 04:48 AM   #1
doc.ramses
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Location: Planet Earth

Join Date: Jan 2011
Posts: 26
Default GATK update changes UnifiedGenotyper output

Hey,

recently I upgraded to the latest version (GenomeAnalysisTK-1.2-1-g33967a4) and I noticed that when I run the UnifiedGenotyper with standard settings, I don't get the "SB" value, that I need for hard-filtering. When I ran the UG of the previous version with standard settings, I got it.
How can I set for this parameter in the new version ?

Cheers!
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