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Old 03-06-2013, 06:57 AM   #1
scondo
Junior Member
 
Location: Innsbruck

Join Date: Feb 2013
Posts: 6
Default dwgsim -x command don't work

Hi,

i want to simulate reads with a Bed-file. I use the -x command but i didn't get any output.

FILE ucsc_chr1.pa.fa
-> Sequence of CHR1 fa-format


FILE test_chr1_exon_1.bed:

[root@radjedef DWGSIM]# cat test_chr1_exon_1.bed
chr1 67000041 67000051 CCDS30744.1_cds_0_0_chr1_67000042_f 0 +


[root@radjedef DWGSIM]# ./dwgsim -N 5 -x test_chr1_exon_1.bed ucsc_chr1.pa.fa Read
[dwgsim_core] chr1 length: 249250621
[dwgsim_core] 1 sequences, total length: 249250621
[dwgsim_core] Currently on:
[dwgsim_core] 0

thanks a lot!

Last edited by scondo; 03-06-2013 at 07:10 AM.
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