Hi All
I have a multi-fasta file with approximately 2000 sequences of varying length that have different start and end regions. I need to trim all my sequences in a way that all the sequences start with “ATAGCCGGCACCCTGGT” and ends with “GGCCATATGAGTGGGCC”. Any script would be really helpful to remove bases upstream of ATAGCCGGCACCCTGGT and downstream of GGCCATATGAGTGGGCC so that all the sequences become of equal length, and have the same start and end.
Thanks for your help
Baika
I have a multi-fasta file with approximately 2000 sequences of varying length that have different start and end regions. I need to trim all my sequences in a way that all the sequences start with “ATAGCCGGCACCCTGGT” and ends with “GGCCATATGAGTGGGCC”. Any script would be really helpful to remove bases upstream of ATAGCCGGCACCCTGGT and downstream of GGCCATATGAGTGGGCC so that all the sequences become of equal length, and have the same start and end.
Thanks for your help
Baika
Comment