I have short read below 200bp solexa data and used bwa for mapping,but bwa result without '@SQ lines' in the header,How can i get @SQ lines in bwa result?
Parameter:bwa aln -l 32 -M 3 database.fa shortread.fq >aln.sai
bwa samse database.fa aln.sai shortread.fq >aln.sam
Anyone who can help me,Thank you very much!
Parameter:bwa aln -l 32 -M 3 database.fa shortread.fq >aln.sai
bwa samse database.fa aln.sai shortread.fq >aln.sam
Anyone who can help me,Thank you very much!
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