Dear Tophat2 user,
After I ran tophat2 with --bowti1 option I am now trying to run tophat-fusion-post.
My directory structure is
- top_dir
When I run post I get an error like
EXIT CODE 5
FATAL: Argument 1 ("-db") is not recognized or is improperly formed.
Do you have an idea what I am doing wrong?
thanks
After I ran tophat2 with --bowti1 option I am now trying to run tophat-fusion-post.
My directory structure is
- top_dir
-tophat_sample_1
-tophat_sample_2
-ensGene.txt
-refGene.txt
-mcl
-blast (human_genomic* and nt*)
-tophat_sample_2
-ensGene.txt
-refGene.txt
-mcl
-blast (human_genomic* and nt*)
When I run post I get an error like
EXIT CODE 5
FATAL: Argument 1 ("-db") is not recognized or is improperly formed.
Do you have an idea what I am doing wrong?
thanks
Comment