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Old 08-09-2019, 12:02 AM   #1
reprogrammer
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Location: Shanghai

Join Date: Jan 2016
Posts: 12
Default Downstream analysis of methylkit

I have finished my RRBS analysis with methylkit R package. It returns me plenty of results, such as methylation distribution, coverage, clustering, annotation in the genome, DMRs and differential methylated genes.

What could I do next with the data methylkit provided? I would like to show the curves of the methylation levels on upstream +5000 bp, gene body, and downstream -5000 bp. Which pipeline or package can help me do this?

Thank you very much.

Jerry
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