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Old 11-27-2017, 05:22 AM   #2
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Join Date: Feb 2008
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Also, I wrote a perl script to count the number of times reads mapped to each of the transcripts (~15,000).. Can I use the counts obtained from this script?? Because I dont need to gather metafeatures into features and then count..
That will work. How did you handle multi-mappers during alignment? That can skew some of your counts.
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