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Old 02-17-2014, 07:43 AM   #5
maubp
Peter (Biopython etc)
 
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543
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BLAST 2.2.28+ or later has the option of outputting the species name in the tabular output:
http://blastedbio.blogspot.co.uk/201...criptions.html

You might also be interested in "blobology" from the Blaxter lab:
https://github.com/blaxterlab/blobology
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