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Old 02-03-2015, 03:53 PM   #2
Brian Bushnell
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Location: Walnut Creek, CA

Join Date: Jan 2014
Posts: 2,707

Many organisms have multiple copies of genes that may be slightly different. I would worry about classifying two sequences with only 89% or 95% identity as the same transcript. Assembly error rates should be far below that.

But it may depend on the organism... is it haploid or diploid/polyploid?
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