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Old 08-17-2015, 07:13 AM   #2
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,049
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That is a bit odd since you seem to have write permissions in the directory where you are running this command (is that correct)? What kind (length, multifasta)) of reference is in sequence.fasta?

Are you using the latest bowtie2 package?
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