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Old 03-13-2017, 10:36 AM   #3
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Join Date: Apr 2012
Posts: 125

do you mean the first column?

This indeed is my first time to handle the .vcf file. But I did read the document and the all the examples I have found has number of chromosome instead of the specific name in the first column.

Something wrong with my understanding?

I am actually confused about snpEff database/ensembl record: it starts with chromosome 2, but not chromosome 1...
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