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Old 02-28-2019, 07:21 AM   #1
ECO
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Location: SF Bay Area, CA, USA

Join Date: Oct 2007
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Default Exact duplicate reads/readnames/quality/tiles in Novaseq FASTQs

Anyone seen this? Some (not correlated with software versions AFAICT) of our MarkDuplicates jobs are failing because there are exact copies of the same reads in the fastq. Identical readnames, locations/tiles, sequence, qualities.

Really weird...
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