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Old 12-05-2019, 09:44 AM   #5
saimonara
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Location: Bay Area, CA, USA

Join Date: Feb 2014
Posts: 7
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I'm experiencing this problem as well! Unfortunately, I just notice this error and a third of the ~40 runs we've done have the problem. The runs are not sequential and there were no software updates or changes to the scripts that start the demultiplexing. I'm using bcl2fastq v2.19.1.403.
Once I run bcl2fastq again with the same original settings (`bcl2fastq -r 4 -p 4 -w 4`) , the process doesn't generate duplicated data.
Has anyone found a way to fix this? What's going on?!
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