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Old 11-09-2009, 03:48 PM   #7
Torst
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Location: The University of Melbourne, AUSTRALIA

Join Date: Apr 2008
Posts: 275
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Quote:
Originally Posted by ECO View Post
Can you share your strategy for parallel processing with SHRiMP?
Parallelizing SHRiMP is as simple as splitting your input fasta/fastq file into smaller ones, running SHRiMP on each, then merging the hits output file.

Nesoni (open source) does this automatically for you: http://www.vicbioinformatics.com/software.nesoni.shtml
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