Hi there
I'm specifically looking to map Ty elements in the yeast genome, but am also interested in mapping any other large scale changes (deletions, duplications, etc). I have paired-end Illumna data at about 150x coverage. I'm looking for the simplest way to do this. I have found one tool so far (VAMP), but it seems unnecessarily complicated to use. I have experience using Bowtie and Samtools to map SNPs, and was hoping to find something similar.
Any help would be appreciated.
Thanks!
Ryan
I'm specifically looking to map Ty elements in the yeast genome, but am also interested in mapping any other large scale changes (deletions, duplications, etc). I have paired-end Illumna data at about 150x coverage. I'm looking for the simplest way to do this. I have found one tool so far (VAMP), but it seems unnecessarily complicated to use. I have experience using Bowtie and Samtools to map SNPs, and was hoping to find something similar.
Any help would be appreciated.
Thanks!
Ryan
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