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Old 02-27-2013, 06:17 AM   #2
aggp11
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Location: Wisconsin

Join Date: Jun 2011
Posts: 87
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Hi,

Did you make sure that bowtie gave you a sam file as output? In case it didn't check the following post and this might be useful.

http://seqanswers.com/forums/showthread.php?t=8974
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