Hi all,
I wanted to know if there was a simple way to filter the output.psl from BLAT to obtain a file containing only the uniquely mapped reads.
Concerning the multiple hits, does BLAT sort them by any order of probability or else? I couldn't find this information in the documentation... Having a look at the output file makes me think it doesn't.
But, can I nevertheless tell the soft to output only the alignments that are the most likely to be true?
Thanks in advance.
I wanted to know if there was a simple way to filter the output.psl from BLAT to obtain a file containing only the uniquely mapped reads.
Concerning the multiple hits, does BLAT sort them by any order of probability or else? I couldn't find this information in the documentation... Having a look at the output file makes me think it doesn't.
But, can I nevertheless tell the soft to output only the alignments that are the most likely to be true?
Thanks in advance.
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