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Old 08-23-2010, 02:10 AM   #2
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Location: The Republic of Korea

Join Date: Aug 2009
Posts: 8


1) Are contigs created from paired-end reads? If they are, you should assemble them using paired-end assembly function of Newbler. After paired-end assembly, you can get a set of scaffold.

2) In my think, if you have raw reads, you can hybrid assemble them using hybrid assembler such as MIRA3. If you solve this difficulty, please inform me about the solution.

Cheers! ^^
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