Thread: RDXplorer
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Old 11-29-2011, 09:44 PM   #1
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Location: Ann Arbor

Join Date: Oct 2011
Posts: 6
Default RDXplorer

I'm using SVmerge. One of the tools is RDXplorer. I run the It first picked q0 items and write into a sam file. And then it uses samtools mpileup to call variants. But it doesn't work, showing that :
[bam_header_read] EOF marker is absent. The input is probably truncated.
[bam_header_read] invalid BAM binary header (this is not a BAM file).

The script truncate the bam file itself and it doesn't move on. What can I do?
Thank you very much
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