Im trying to install BWA in a Fedora 10 64 bit machine
and I run the following commands:
I get the following error:
Any clues?
and I run the following commands:
Code:
tar xvjf bwa-0.6.1.tar.bz2 make
Code:
gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD ksw.c -o ksw.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o In file included from bwtaln.h:6, from bwaseqio.c:4: bwt.h:61: error: expected specifier-qualifier-list before ‘size_t’ make: *** [bwaseqio.o] Error 1
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