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Old 05-21-2019, 04:44 AM   #2
Senior Member
Location: Germany

Join Date: Oct 2008
Posts: 415

Why not just specify -nanopore-corrected to probably make canu skip this stage ?

Also, why would you even want to do this ? You'll get really awful results, the correction is there for a reason.

Also, I think miniasm does rapid assembly on uncorrected reads, but then you have massive problems trying to correct base level errors in the asm afterwards.
colindaven is offline   Reply With Quote