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Old 02-11-2015, 02:32 AM   #2
sarvidsson
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Location: Berlin, Germany

Join Date: Jan 2015
Posts: 137
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I've had good results with GMAP (http://research-pub.gene.com/gmap/) for such tasks.
Otherwise BLAT (https://genome.ucsc.edu/FAQ/FAQblat.html) is a quite popular choice.
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