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Old 10-02-2013, 12:54 PM   #3
Senior Member
Location: USA

Join Date: Jul 2012
Posts: 184

Annoyingly, IEM doesn't allow for custom indices. For that, you will have to manually generate a sample sheet. If you're unfamiliar with the layout of the sample sheet's layout, the easiest way to do this is to fill everything out in IEM with TruSeq indices and then changing the sequences to the right ones using notepad or a text editor. I don't recommend editing it in Excel as it can mess up the formatting of the sample sheet.
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