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Old 07-19-2011, 11:47 AM   #3
nsl
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Location: CA

Join Date: Jan 2011
Posts: 28
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Hi Mark,

I find myself in your shoes, did you figure out why you have FPKM of "0" for genes you know to be expressed? I also, find that if I use a reference annotation of dmel to run cufflinks I get "0" for FPKM, but if I run it without a reference file I get values. Any insight if you have, would be much appreciated.

nsl
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