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Old 12-21-2009, 09:33 AM   #2
Peter (Biopython etc)
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,541

You have already got Sanger style FASTQ files from the NCBI SRA, and MAQ likes standard Sanger FASTQ files. You would only need to convert if you started with Solexa or Illumina encoded FASTQ files

Maybe the problem is something else - could you post the first 20 lines or so of the FASTQ file in the forum - use the [ code ] data [ /code ] tags to make it display nicely.
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