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Old 01-27-2012, 09:02 AM   #6
LizBent
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Location: Guelph, Ontario, Canada

Join Date: Jan 2012
Posts: 31
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I've tried the 13-mer adapter end sequence with the FastXtoolkit (Clip), and it didn't remove any reads. However, when I use the full primer sequences, reads are clipped and removed. I'm going to try clipping the 13-mer sequence with CutAdapt, but I thought I would mention it in case anyone can tell me the difference between how these programs work.
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