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Old 10-01-2015, 04:29 PM   #1
deep639
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Location: Irvine

Join Date: Dec 2013
Posts: 10
Default UCSC and RefSeq Genes Track coordinate information

I had a question regarding two microRNA annotations. The two RNAs were Mir1195 and Mir5128. The reference genome was the mouse mm10 genome. They don't have the same coordinate information for UCSC and RefSeq Genes track. By that I mean, that refseq and UCSC have the microRNA on different chromosomes, for Mir1195 on the UCSC genes track it is on chr17, for refseq its on chr16. Is there an obvious reason for why this is happening? I have attached the links on UCSC for the two microRNAs showing the different coordinates.

http://genome.ucsc.edu/cgi-bin/hgTra...=2.0&dinkR=2.0

http://genome.ucsc.edu/cgi-bin/hgTra...=2.0&dinkR=2.0

Last edited by deep639; 10-01-2015 at 04:34 PM.
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