Our data is 454 pyrosequencing metagenomic data (not 16s rRNA). We need to assembly them together for metagenomic study. Some people suggest I should try the same way as Transcript assembly instead of genome assembly because the gene does not occur uniformly across genomes. What's your suggestions.
We have newbler, velvet, mira available. Which assembler work the best according to your experience for metagenomic data assembly?
We have newbler, velvet, mira available. Which assembler work the best according to your experience for metagenomic data assembly?
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