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Old 06-26-2015, 01:35 AM   #10
Junior Member
Location: Iran

Join Date: Nov 2013
Posts: 4
Default cufflinks warnings: could not find fasta records

Dar friends,

I am getting the same warnings. I have downloaded Galgal4 reference files from iGenome. When running cufflinks, I am getting "warning: couldn't find fasta record for LGE64 ...". I think these are contigs that are present in genes.gtf but not in the genome.fasta. My question is: could these warnings affect my downstream analyses? If so, what should I do to resolve these problem?

any comment would be appreciated
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